An Auto-Processing Algorithm for Liver Fat Quantification

  • ZHANG Miao ,
  • ZHAI Guo-qiang ,
  • LI Gai-ying ,
  • WANG Yi ,
  • FAN Ming-xia ,
  • LI Jian-qi
Expand
  • 1. Shanghai Key Laboratory of Magnetic Resonance, Department of Physics, East China Normal University, Shanghai 200062, China;
    2. Department of Radiology, Weill Medical College of Cornell University, Ithaca, New York, USA;
    3. Department of Biomedical Engineering, Cornell University, Ithaca, New York, USA

Received date: 2018-04-18

  Online published: 2018-11-28

Abstract

Magnetic resonance spectroscopy (MRS) is useful for rapid and robust liver fat quantification. MR spectra of liver can be acquired in a single breath-hold with the high-speed multi-echo stimulated echo acquisition mode, from which T2-corrected liver proton density fat fraction (PDFF) can be derived. However, the widespread application of this method is hampered by the cumbersome post-processing procedures for the spectroscopy data. In this work, an automated algorithm for liver fat quantification from multi-echo spectroscopy data was developed. The feasibility and accuracy of the algorithm were evaluated with fat-water phantoms experiments and human liver experiments. The results demonstrated excellent correlation and agreement between the PDFF measurements with the proposed algorithm and those obtained with the jMRUI software.

Cite this article

ZHANG Miao , ZHAI Guo-qiang , LI Gai-ying , WANG Yi , FAN Ming-xia , LI Jian-qi . An Auto-Processing Algorithm for Liver Fat Quantification[J]. Chinese Journal of Magnetic Resonance, 2018 , 35(4) : 427 -439 . DOI: 10.11938/cjmr20182636

References

[1] SANYAL A J, BANAS C, SARGEANT C, et al. Similarities and differences in outcomes of cirrhosis due to nonalcoholic steatohepatitis and hepatitis C[J]. Hepatology, 2006, 43(4):682-689.
[2] EKSTEDT M, FRANZéN L E, MATHIESEN U L, et al. Long-term follow-up of patients with NAFLD and elevated liver enzymes[J]. Hepatology, 2006, 44(4):865-873.
[3] KINNER S, REEDER S B, YOKOO T. Quantitative imaging biomarkers of NAFLD[J]. Dig Dis Sci, 2016, 61(5):1337-1347.
[4] RAJARSHI B, MICHAEL P, TUNNICLIFFE E M, et al. Multiparametric magnetic resonance for the non-invasive diagnosis of liver disease[J]. J Hepatol, 2014, 60(1):69-77.
[5] HERNANDO D, HALDAR J P, SUTTON B P, et al. Joint estimation of water/fat images and field inhomogeneity map[J]. Magn Reson Med, 2008, 59(3):571-580.
[6] MA X, HOLALKERE N S, KAMBADAKONE R A, et al. Imaging-based quantification of hepatic fat:methods and clinical applications[J]. Radiographics, 2009, 29(5):1253-1277.
[7] WANG L L, ZHU Y, ZHONG K. Progresses in MRI and MRS studies on obesity[J]. Chinese J Magn Reson, 2016, 33(1):168-178. 王璐璐, 朱勇, 钟凯. MRI与MRS在肥胖症研究中的应用进展[J]. 波谱学杂志, 2016, 33(1):168-178.
[8] HORNG D E, HERNANDO D, REEDER S B. Quantification of liver fat in the presence of iron overload[J]. J Magn Reson Imaging, 2017, 45(2):428-439.
[9] TOWBIN A J, SERAI S D, PODBERESKY D J. Magnetic resonance imaging of the pediatric liver:imaging of steatosis, iron deposition, and fibrosis[J]. Magn Reson Imaging Clin N Am, 2013, 21(4):669-680.
[10] HAMILTON G, MIDDLETON M S, BYDDER M, et al. The effect of PRESS and STEAM sequences on magnetic resonance spectroscopic liver fat quantification[J]. J Magn Reson Imaging, 2009, 30(1):145-152.
[11] REEDER S B, CRUITE I, HAMILTON G, et al. Quantitative assessment of liver fat with magnetic resonance imaging and spectroscopy[J]. J Magn Reson Imaging, 2011, 34(4):729-749.
[12] MEISAMY S, HINES C D, HAMILTON G, et al. Quantification of hepatic steatosis with T1-independent, T2-corrected MR imaging with spectral modeling of fat:blinded comparison with MR spectroscopy[J]. Radiology, 2011, 258(3):767-775.
[13] HAMILTON G, MIDDLETON M S, HOOKER J C, et al. In vivo breath-hold 1H MRS simultaneous estimation of liver proton density fat fraction, and T1 and T2 of water and fat, with a multi-TR, multi-TE sequence[J]. J Magn Reson Imaging, 2015, 42(6):1538-1543.
[14] PINEDA N, SHARMA P, XU Q, et al. Measurement of hepatic lipid:high-speed T2-corrected multiecho acquisition at 1H MR spectroscopy--a rapid and accurate technique[J]. Radiology, 2009, 252(2):568-576.
[15] KRSSAK M, HOFER H, WRBA F, et al. Non-invasive assessment of hepatic fat accumulation in chronic hepatitis C by 1H magnetic resonance spectroscopy[J]. Eur J Radiol, 2010, 74(3):60-66.
[16] LI J Q, WU B, TANG F, et al. In vivo 1H MRS of liver:The effects of frequency correction[J]. Chinese J Magn Reson, 2007, 24(3):335-340.李建奇, 吴斌, 唐峰, 等. 频率校正方法在活体肝脏1H磁共振波谱中的应用[J]. 波谱学杂志, 2007, 24(3):335-340.
[17] MARSHALL I, HIGINBOTHAM J, BRUCE S, et al. Use of voigt lineshape for quantification of in vivo 1H spectra[J]. Magnc Reson Med, 1997, 37(5):651-657.
[18] KRIESTEN E, MAYER D, ALSMEYER F, et al. Identification of unknown pure component spectra by indirect hard modeling[J]. Chemometr Intell Lab, 2008, 93(2):108-119.
[19] HAMILTON G, YOKOO T, BYDDER M, et al. In vivo characterization of the liver fat 1H MR spectrum[J]. NMR Biomed, 2011, 24(7):784-790.
[20] CHEN L, WENG Z Q, GOH L Y, et al. An efficient algorithm for automatic phase correction of NMR spectra based on entropy minimization[J]. J Magn Reson Imaging, 2002, 158(1):164-168.
[21] BAO Q J, FENG J W, CHEN L, et al. A robust automatic phase correction method for signal dense spectra[J]. J Magn Reson Imaging, 2013, 234(8):82-89.
[22] HU B H, YUAN H Z, GUO J X, et al. Determination of plant oils by 1H and 13C NMR[J]. Chinese J Magn Reson, 1993, 10(3):251-259. 胡邦豪, 袁汉珍, 郭建新, 等. 植物油的1H NMR和13C NMR的测定[J]. 波谱学杂志, 1993, 10(3):251-259.
[23] BERNARD C P, LINEY G P, MANTON D J, et al. Comparison of fat quantification methods:a phantom study at 3.0 T[J]. J Magn Reson Imaging, 2008, 27(1):192-197.
[24] CATHERINE M, YU H, MSE A, et al. T1 independent, T2* corrected MRI with accurate spectral modeling for quantification of fat:Validation in a fat-water-SPIO phantom[J]. J Magn Reson Imaging, 2009, 30(5):1215-1222.
[25] VAN WERVEN J R, SCHREUDER T C, NEDERVEEN A J, et al. Hepatic unsaturated fatty acids in patients with non-alcoholic fatty liver disease assessed by 3.0 T MR spectroscopy[J]. Eur J Radiol, 2010, 75(2):102-107.
[26] REN J M, IVAN D, DEAN S A, et al. Composition of adipose tissue and marrow fat in humans by 1H NMR at 7 Tesla[J]. J Lipid Res, 2008, 49(9):2055-2062.
[27] KANG G H, CRUITE I, SHIEHMORTEZA M, et al. Reproducibility of MRI-determined proton density fat fraction across two different MR scanner platforms[J]. J Magn Reson Imaging, 2011, 34(4):928-934.
[28] VU K N, GILBERT G, CHALUT M, et al. MRI-determined liver proton density fat fraction, with MRS validation:Comparison of regions of interest sampling methods in patients with type 2 diabetes[J]. J Magn Reson Imaging, 2015, 43(5):1090-1099.
Outlines

/