Articles

Development of a Temperature Senor Based on 19F-labeled Phosphorylated Ubiquitin

  • Zhi-wu ZHANG ,
  • Ju YANG ,
  • Ze-feng NIE ,
  • Shang-xiang YE ,
  • Xu DONG ,
  • Chun TANG
Expand
  • 1. CAS Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic Molecular Physics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China
    2. University of Chinese Academy of Sciences, Beijing 100049, China
    3. Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan 430074, China
    4. Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China

Received date: 2020-10-16

  Online published: 2020-11-16

Abstract

Ubiquitin (Ub) is a signaling protein in eukaryotic cells, and it functions in the processes of protein degradation and DNA repairing. The published data indicated that the phosphorylation of Ub on Ser65 leads to two stable solution conformations, which can be regulated by pH. In the present project, it was found that the conformational ratio could also be modulated by temperature. Based on this feature, pUb was chemically labeled with a 19F probe for determination of conformational ratio under various temperatures using 19F NMR. We showed that the conformation ratio of pUb was linearly proportional to temperature gradient. Consequently, the temperature of a biological sample can be calculated with a given conformational ratio of pUb, and 19F-labeled pUb can function as a thermosensor. This thermosensor could be used to monitor temperature of in vitro experiments, and it is also able to be taken to explore regulation of pUb function by temperature. Furthermore, the 19F-labeled pUb thermosensor could be developed to detect intracellular temperature in-cell NMR assays.

Cite this article

Zhi-wu ZHANG , Ju YANG , Ze-feng NIE , Shang-xiang YE , Xu DONG , Chun TANG . Development of a Temperature Senor Based on 19F-labeled Phosphorylated Ubiquitin[J]. Chinese Journal of Magnetic Resonance, 2021 , 38(2) : 173 -181 . DOI: 10.11938/cjmr20202867

References

1 BLOCK B A . Thermogenesis in muscle[J]. Annu Rev Physiol, 1994, 56 (1): 535- 577.
2 DUHR S , BRAUN D . Why molecules move along a temperature gradient[J]. Proc Natl Acad Sci U S A, 2006, 103 (52): 19678- 19682.
3 YANG J M , YANG H , LIN L W . Quantum dot nano thermometers reveal heterogeneous local thermogenesis in living cells[J]. ACS Nano, 2011, 5 (6): 5067- 5071.
4 NICHOLLS D G , LOCKE R M . Thermogenic mechanisms in brown fat[J]. Physiol Rev, 1984, 64 (1): 1- 64.
5 SILVA J E . Thermogenic mechanisms and their hormonal regulation[J]. Physiol Rev, 2006, 86 (2): 435- 464.
6 BAL N C , MAURYA S K , SOPARIWALA D H , et al. Sarcolipin is a newly identified regulator of muscle-based thermogenesis in mammals[J]. Nat Med, 2012, 18 (10): 1575- 1579.
7 GARAMI A , STEINER A A , ROMANOVSKY A A . Fever and hypothermia in systemic inflammation[J]. Handb Clin Neurol, 2018, 157, 565- 597.
8 BLOMQVIST A , ENGBLOM D . Neural mechanisms of inflammation-induced fever[J]. Neuroscientist, 2018, 24 (4): 381- 399.
9 CHRETIEN D , BéNIT P , HA H H , et al. Mitochondria are physiologically maintained at close to 50℃[J]. PLoS Biol, 2018, 16 (1): e2003992.
10 ANDREWS Z B , DIANO S , HORVATH T L . Mitochondrial uncoupling proteins in the CNS: in support of function and survival[J]. Nat Rev Neurosci, 2005, 6 (11): 829- 840.
11 ARAI S , SUZUKI M , PARK S J , et al. Mitochondria-targeted fluorescent thermometer monitors intracellular temperature gradient[J]. Chem Commun, 2015, 51 (38): 8044- 8047.
12 OKABE K , SAKAGUCHI R , KIYONAKA S , et al. Intracellular thermometry with fluorescent sensors for thermal biology[J]. Pflugers Arch, 2018, 470 (5): 717- 731.
13 NAKANO M , ARAI Y , IPPEI KOTERA I , et al. Genetically encoded ratiometric fluorescent thermometer with wide range and rapid response[J]. PLoS ONE, 2017, 12 (2): e0172344.
14 CHOWDHURY S , MARIS C , ALLAIN F H T , et al. Molecular basis for temperature sensing by an RNA thermometer[J]. EMBO J, 2006, 25 (11): 2487- 2497.
15 VIJAY-KUMAR S , BUGG C E , COOK W J . Structure of ubiquitin refined at 1.8?[J]. J Mol Biol, 1987, 194 (3): 531- 544.
16 KOMANDER D , RAPE M . The ubiquitin code[J]. Annu Rev Biochem, 2012, 81, 203- 229.
17 TANG C , ZHANG W P . How phosphorylation by PINK1 remodels the ubiquitin system: a perspective from structure and dynamics[J]. Biochemistry, 2020, 59 (1): 26- 33.
18 KANE L A , LAZAROU M , AI F , et al. PINK1 phosphorylates ubiquitin to activate Parkin E3 ubiquitin ligase activity[J]. J Cell Biol, 2014, 205 (2): 143- 153.
19 YE S X , GONG Z , YANG J , et al. Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch[J]. Protein Cell, 2019, 10 (12): 908- 913.
20 KOYANO F , OKATSU K , KOSAKO H , et al. Ubiquitin is phosphorylated by PINK1 to activate parkin[J]. Nature, 2014, 510 (7503): 162- 166.
21 DONG X , GONG Z , LU Y B , et al. Ubiquitin S65 phosphorylation engenders a pH-sensitive conformational switch[J]. Proc Natl Acad Sci U S A, 2017, 114 (26): 6770- 6775.
22 WAUER T , SWATEK K N , WAGSTAFF J L , et al. Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis[J]. EMBO J, 2015, 34 (3): 307- 325.
23 AN Y F , CHEN L M , SUN S H , et al. QuikChange shuffling: a convenient and robust method for site-directed mutagenesis and random recombination of homologous genes[J]. N Biotechnol, 2011, 28 (4): 320- 325.
24 CHEN H F , VIEL S M , ZIARELLI F H , et al. 19F NMR: a valuable tool for studying biological events[J]. Chem Soc Rev, 2013, 42 (20): 7971- 7982.
25 KITEVSKI-LEBLANC J L , PROSSER R S . Current applications of 19F NMR to studies of protein structure and dynamics[J]. Prog Nucl Magn Reson Spectrosc, 2012, 62, 1- 33.
26 SHEKHAWAT S S , PHAM G H , PRABAKARAN J , et al. Simultaneous detection of distinct ubiquitin chain topologies by 19F NMR[J]. ACS Chem Biol, 2014, 9 (10): 2229- 2236.
27 DANIELSON M A , FALKE J J . Use of 19F NMR to probe protein structure and conformational changes[J]. Annu Rev Biophys Biomol Struct, 1996, 25, 163- 195.
28 GOOD N E , DOUGLAS WINGET G , WINTER W , et al. Hydrogen ion buffers for biological research[J]. Biochemistry, 1966, 5 (2): 467.
Outlines

/