Chinese Journal of Magnetic Resonance ›› 1995, Vol. 12 ›› Issue (1): 29-38.

Previous Articles     Next Articles

NMR SECONDARY CHEMICAL SHIFT AND PROTEIN SECONDARY STRUCTURE

Hu Hongyu, Lu Zixian, Du Yucang   

  1. Shanghai Institute of Biochemistry, The Chinese Academy of Sciences Shanghai 200031
  • Received:1994-03-08 Revised:1994-06-21 Published:1995-02-05 Online:2018-01-17

Abstract: An additive variation of NMR chemical shift related to conformation of protein and peptide is named secondary chemical shift (△δ). Based on the chemical shift data of residues, the relationship between chemical shift of αH. NH. 13Cα.13CO and the secondary structure has been surveyed. In most α-helical structures, the △δαH and △δNH of a residue show reverse phase variation and the periodicity of △δαH. and △δNH is ca.3.6 residues/Cycle, which is in accordance with that of a-helix. Furthermore, the periodic feature is also found in △δ11Ca and △δ13co in belieal segments. However, in the case of β-sheet and other structures, it does not imply this characteristic secondary chemical shift. The hydrogen bond effect among peptide chain probably caused the periodic variation of the secondary chemical shift is also discussed.

Key words: Secondary chemical shift, Secondary structure, Periodicity, Hydrogen bond effect