Select
A New Higher Carbon Sugar-Derived Amino Alcohol and Its Intermediate: Synthesis and NMR Studies
ZOU Da-Peng, LV Min, LIU Ning, LIU Hong-Min
Chinese Journal of Magnetic Resonance, 2006, 23(2): 153-159.
An intermediate of higher carbon sugar-derived amino alcohol (1αS, 2αR, 3αS, 4S, 7E, 9αR, 10αR)-1, 2∶9, 10-di-O -isopropylidene-3-nitromethyl-5, 6-dideoxy-dec-7-enos-4-ulose-1, 4∶7, 10-difuranose-4, 8-pyranose) (compound 1 ) was synthesized from D-xylose using hetero-Diels-Alder addition followed by Henry reaction. Compound 2 (1αS, 2αR, 3αS, 4S, 7αS, 8βR, 9αR, 10αR)-1, 2∶9, 10-di-O -isopropylidene-3-aminomethyl-5, 6-dideoxy-dec-4-ulose-1, 4∶7, 10-difuranose-4, 8-pyranose) was synthesized stereoselectively by catalytic hydrogenation of compound 1 . Complete assignment of 1 H and 13 C chemical shifts of compounds 1 and 2 was obtained by 2D NMR techniques, including 1 H-1 H COSY, HMQC and HMBC. ESI-MS/MS spectra of compound 1 were also measured to study its fragmentation behaviors. The structure of compound 2 was determined.
Select
NMR Study of the Unfolding Mechanism for the Thrombin-Binding DNA Aptamer d (GGTTGGTGTGGTTGG)
LIU Hui-Li, JIANG Bin, LIU Mai-Li, MAO Xi-An
Chinese Journal of Magnetic Resonance, 2006, 23(2): 161-168.
15mer DNA d(GGTTGGTGTGGTTGG) is a thrombin-binding DNA aptamer (TBA), with inhibits clotting, of a high affinity with thrombin. In the presence of K+ , TBA forms a right-handed-helix chair-like conformation with two stacked G-quartets and a regular phosphodiester backbone. The two G-quartets are linked by two TT loops at one end and a TGT loop at the other. The Hydrogen exchange rates of the imino protons of TBA in the presence of K+ were measured in this study. The results show that the G2, G11 and G15 iminos outside both the TGT loop and the two TT loops exchange faster, and in comparison the G6, G5 and G14 iminos have lower exchange rates because of the protection from the TGT loop and the TT loops. We also found that the stability of the TGT loop is similar to the two TT loops, and that the bases T4, T13 and T9 play more important roles in keeping the hydrogen bond stable in the K+ : TBA complex than in the Sr2+ : TBA complex. Evidence was obtained for the unfolding mechanism for the thrombin-binding aptamer. The data show that the hydrogen bonds between G2 and G14, G11 and G5, G15 and G1 outside the loops break first, and when the temperature increases further, the TGT loop and the two TT loops also become random coils.
Select
Fingerprinting Tea by 1 H NMR
CHEN Bo, ZHANG Wei, KANG Hai-Ning, DENG Zhi-Wei, WANG Xiao-Ru
Chinese Journal of Magnetic Resonance, 2006, 23(2): 169-180.
The chemical fingerprints of 35 tea samples collected or purchased from Fujian、Yunnan、Guangdong、Jiangxi provinces were analyzed by 1 H NMR. Upon initial signal assignment, about 20 chemical constituents in tea were identified, including amino acids, theanine, catechins (EGC, EC, EGCG, ECG and unknown catechins), sucrose, unknown sugars, fatty acids, caffeine, quinic acid and so on. The NMR data were then analyzed by the principal component analysis (PCA) technique. The results show that different kinds of tea and Tieguanyin tea from different producing areas can be differentiated based on their chemical composition. Furthermore, the chemical constituents that can be used as the fingerprints for differentiating different types of tea were found. Compared to the green tea and the oolong tea, the red tea and the black tea were found to contain higher levels of certain amino acids and some unknown substances, and lower levels of catechins. Xiping Tieguanyin, as compared to Xianghua and Gande Tieguanyin, was found to have higher levels of certain amino acids, caffeine, EGCG, ECG and some unknown substances, and lower levels of EC, EGC. Hierarchical cluster analysis (HCA) of the data shows similar results as those obtained by PCA.
Select
13 C NMR Fingerprints of Flos Lonicera
SUN Qing-Lei, LIN Yun-Liang, WANG Xiao, CHENG Chuan-Ge, LIU Jian-Hua-
Chinese Journal of Magnetic Resonance, 2006, 23(2): 181-186.
13 C NMR spectra of Flos lonicera extracts were obtained by PFT-NMR. The 13 C chemical shifts were assigned and compared with those of the chlorogenic acid, the effective component of Flos lonicera. The results suggest that the 13 C NMR spectra of the Flos lonicera extracts show good reproducibility, and the spectral characteristics of the extracts obtained from different Flos lonicera sample are, in general, similar to those of chlorogenic acid. Therefore, the 13 C NMR fingerprints of Flos lonicera extract can be used as a criterion to check the authenticity of Flos lonicera and Flos lonicera products. Comparison of the 13 C NMR fingerprints between the high grade Flos lonicera and those of lower quality was performed, and the results show that it is feasible to use the differences in the 13 C NMR fingerprints to measure the quality of Flos lonicera with sufficient reliability.
Select
Estimation and Prediction of 13 C Chemical Shifts of Saturated Ketones: A Quantitative Structure-Spectrum Relationship Study
ZHANG Qiao-Xia, ZHOU Peng, LI Gen-Rong, LI Zhi-Liang
Chinese Journal of Magnetic Resonance, 2006, 23(2): 241-246.
A multiple linear regression model for calculating 13 C chemical shifts in saturated ketones from the structural indices namely the atomic electronegative interaction (AEIV) vector and the atomic hybridation state index (HSI) was established using the 13 C chemical shifts of 153 carbon atoms in 55 saturated alphatic ketones as the training set. The estimation correlation coefficient (R ) and the standard deviation (S D) of molecular modeling (MM) were R MM =0.997 and SD MM =7.155, respectively. Leave-one-out (LOO) cross-validation (CV) was used to measure the prediction capability of the model, resulting in a correlation coefficient (R CV ) of 0.993 and a standard deviation (SD CV ) of 10.195. Furthermore, the validity of this method was tested using the 13 C chemical shifts of three sets of saturated ketones selected randomly as the test sets, resulting in correlation coefficients of 0.996, 0.996 and 0.999, respectively. The results show that the model based on AEIV and HSI can be used to predict 13 C chemical shifts in saturated ketones satisfactorily and with sufficient stability.
Select
Assignment of 13 C and 1 H Chemical Shifts of Potassium Sodium Dehydroandrographolide Succinate
LI Wen, SHA Yi, WEI Jian-Ling, GAO Hui-Yuan, WU Li-Jun-
Chinese Journal of Magnetic Resonance, 2006, 23(2): 247-251.
Potassium sodium dehydroandrographolide succinate (PSDS) is a new antibacterial and antiviral agent derived from andrographolide, a compound found in the extract of medicinal herb Andrographis paniculata (Burm. f.) Nees. In this study, the 13 C and 1 H chemical shifts of the compound were assigned using 1D NMR and 2D NMR techniques including gCOSY, gHSQC, gHSQC-TOCOSY and gHMBC. Its structure was determined from the NMR data.
Select
Measurement of Permeability of Porous Rock Using NMR T 2 Relaxation Distribution
PENG SHI-Lin, YE Chao-Hui, LIU Mai-Li-
Chinese Journal of Magnetic Resonance, 2006, 23(2): 271-282.
The calculation methods for permeability of porous rock from its NMR T 2 relaxation distribution are introduced. There are three available models (i.e., SDR, Coates-cutoff and Coates-sbvi model). The Coates-cutoff model and Coates-sbvi model are very sensitive to the precision of irreducible fluid model, and thus the permeability results calculated by these two models are strongly affected by the precision of moveable/irreducible fluid volume calculation. On the other hand, the SDR model is not affected by irreducible fluid model, but it is sensitive to the property of the fluid in the core’s pores. Because there is only one variable coefficient in these models, the calculation errors are large when the permeability is very low. We found that the SDR-REV model, developed recently with three variable coefficients, is much suitable for calculating permeability of the core samples with lower permeability.